Showing posts with label science. Show all posts
Showing posts with label science. Show all posts

Thursday, February 10, 2011

The Science Of Love: A Valentine

When science examines romantic attraction
(In other words, love and affection)
It uses the methods that serve us so well
But hearts can’t survive a dissection.

We study, in science, by breaking up problems
And looking at pieces and bits
Assemble the puzzle to show the big picture—
Assuming each smaller piece fits!

In life, we see love as a powerful feeling
It’s typically shared (say, by two);
You wouldn’t find love by examining neurons
But that’s something science might do.

A chemical cocktail assaulting the cortex,
Anandamide flooding the brain
Endogenous opiates running amok
And you’re either in love, or insane

Neurochemistry surely is crucial, I know,
But something important is missing
I’ve never encountered a brain, on its own,
With an interest in hugging or kissing.

Your genes play a part, I’m reliably told
By geneticists (likely, they’d know)
Though environment, epigenetically, molds
How those characteristics might show.

My heartbeat will race at the thought of your face
And my stomach gets tied in a knot
My fingers may tremble; my brow may perspire,
And other parts start feeling hot.

But none of these pieces can claim to be love
They’re mere tiles, in a larger mosaic
This modern view separates love into pieces;
My view is a bit more archaic

When I tell you I love you, you know what I mean:
Not only with all of my heart
Not only my brain, as complex as it is,
But all of me—every last part.

Looking through my blog stats, I have noticed the beginnings of the February Bump--the google hits for "biology valentines poem" or "scientific valentine" or the like (including charming misspellings).   And so, I give you this year's offering.   Funny thing is, it looks like it is an argument against a science of love, and that is not at all my view.  I am very much in favor of using the power of science to study love; I've even taught a senior seminar, half of which was on love (the other half, war. go figure.).  What I am opposed to is reductionism masquerading as explanation.  Love is something that whole organisms (usually people, but if you've watched my cat...) do, not something that parts of organisms do.  A proper explanation of love is not one which points to neurotransmitters or hormones; if anything, that is the how of love, but not the what or why.

For the one-stop-shopping ease of my readers, allow me to link to a couple of earlier valentines: the one that gets the most hits is the Evolutionary Biology Valentine's Day Poem.  It did make it to The Open Laboratory--the collection of the best science blog posts of that year.  Oddly enough, the previous year, Much Ado About The Brain? was featured in that year's Open Laboratory (and it is a love poem, which explains the link), and the following year, A Scientific Valentine made the collection.  One I don't recommend you use is What Do Women Want? (A Valentine's Day Poem), but hey, if that works for you, go for it.  Lastly, one of my favorites that I will not give you permission to use is An Uncommon Valentine Poem.  That was for a particular person, and it is hers, so you can't have it.

You have my permission, as per this post, to use these valentine verses if you wish.  Frankly, if you are in the sort of relationship where these are appropriate, you are an incredibly lucky person, and who am I to stand in the way of such a force of nature?  No payment is required.  However, having just found out that CuttleDaughter has been approved for a semester overseas, I would be tremendously grateful if those who use these verses and can afford to, would notice the tip jar over there to the right.  And, not that I'm voyeuristic or anything, but I'd love to hear about any positive (or humorous negative) reactions to these verses, if you do use one!

Thursday, April 08, 2010

You Are What You Eat

Bacteria are living, by the trillions, in your gut;
There's an ecosystem hidden in your skin
It's a case of symbiosis, if an icky one, somewhat,
Where both human and bacteria can win.

They help us with digestion (as they mostly help themselves)
Through their enzymatic breakdown of our food.
For the source of these bacteria, some current research delves,
And they're finding it in seaweed (raw, not stewed).

It's a horizontal transfer, from bacteria on seaweed
To bacteria already in your "zoo",
Of the genes that code for enzymes-so the scientists said "Gee, we'd
Like to see if it's in other people, too!"

But on close examination of a sample from Missouri
Not a single one had enzymes such as these!
Still the study will examine many further groups--don't worry--
From societies with diets from the seas.

And this fascinating finding shows us how to take a look
At some questions that are really really neat:
We may change ourselves, depending on the food we choose to cook,
And we are (through enzyme transfer) what we eat!


BBC story here, and Ed Yong's (far more interesting) one here.

Hmmm... on second reading of my verse, it sounds as if I am saying that *all* of these bacteria must come from seaweed. I think I need another verse...

Thursday, March 04, 2010

Botany Is Destiny

Sigmund Freud (in)famously opined that "anatomy is destiny", that (to oversimplify greatly) one's personality and one's potential were, to a large part, determined by what equipment one possessed between one's legs. Penis envy (he has one, and I don't!), castration anxiety (she doesn't have one, maybe they'll cut mine off, too!), and other Freudian concepts stem directly from whether you are an innie or an outie (so to speak).

The phrase has evolved a bit, and now is also seen as "biology is destiny", with somewhat fewer genital-related shades of meaning, but the earlier meaning is sometimes (often? I have not done a thorough review, so cannot say) lurking just under the surface. Whether our reasons are Freudian or Darwinian, there seems to be enough interest in that one set of complementary organs to support several industries... and the continuation of life as we know it.

We have long known that the brain includes multiple areas involved in face-detection; I begin to wonder if the entire rest of the brain might not be involved in genital-detection. We see them everywhere.

Take plants. I have a cousin, an artist, who (decades ago) exhibited a number of paintings of plants, and of close-ups of parts of plants. It probably won't surprise you to know that a split-open peach pit, in the proper perspective, will make the vast majority of a family gathering blush. It looks quite like the anatomical wall chart I once saw at an OB-GYN's office. Robert Heinlein's "Notebooks of Lazarus Long" includes a phrase that puzzled me when I first read it: "Have you noticed how much they look like orchids? Lovely!" And more recently, PZ Myers' "Wednesday Botanical" posts have included both phallic and yonic photos (or perhaps that is all in my perception).

Oh, underused powers
Of beautiful flowers;
They tantalize, tempt, and entice,
Whether insect or human,
When flowers are bloomin'
There's something that makes us look twice.

The curves I adore, kids,
I oft find in orchids
(Such flowers are dear to our hearts)
It's not quite the same in
A pistil or stamen
But sometimes, it seems, parts is parts.

In just the right lighting
It's rather exciting
When beautiful form follows function
In plant pollination
Or *our* fornication
When parts can perform in conjunction

That such an attraction
Creates a reaction
Is fact that a blind man could see
You might think me crazy--
I'm off to find Daisy
To ask if she'll just let me bee.

Friday, February 12, 2010

Cuttlefish Classic: Happy Birthday Charles Darwin

On the newsstand at the station
There it was, a publication
With a bold prevarication
Where it asked “Was Darwin Wrong?”
Darwin stands among the giants
Of our modern view of science
So, in answer and defiance
I’m replying in this song:

Happy Birthday, Charles Darwin, take a look around today—
You might recognize the path we took, cos you showed us the way.
We will celebrate your influence with unabashed delight;
Happy Birthday Charles Darwin, you were right!

Variation in the features
Of all sorts of nature’s creatures
Was a sign of God, for preachers,
But you thought you’d take a look
It’s descent and not creation
That explains the population
So we start the celebration
For the guy who wrote the book

Happy Birthday, Charles Darwin, take a look around today—
You might recognize the path we took, cos you showed us the way.
We will celebrate your influence with unabashed delight;
Happy Birthday Charles Darwin, you were right!

From the South Pacific Islands
To the bonny Scottish Highlands,
In the oceans and the dry lands
We can see the evidence.
From diversity most splendid,
We infer that we descended;
It was you who comprehended
And your impact was immense!

Happy Birthday, Charles Darwin, take a look around today—
You might recognize the path we took, cos you showed us the way.
We will celebrate your influence with unabashed delight;
Happy Birthday Charles Darwin, you were right!

Well, the theory you created
Has, for decades, been updated,
But it shouldn’t be unstated
That it all began with you
That’s the way with any theory
Though detractors may grow weary
As they try to make folks leery
But they can’t deny it’s true

Happy Birthday, Charles Darwin, take a look around today—
You might recognize the path we took, cos you showed us the way.
We will celebrate your influence with unabashed delight;
Happy Birthday Charles Darwin, you were right!



Cos, you know, it's his birthday and all.

Tuesday, December 15, 2009

Getting The Ball Rolling

Just as a followup to yesterday's exceedingly cool octopus video, another exceedingly cool octopus video.



'Neath the waves, at the turn of the tide,
Where the sand gives you nowhere to hide
Savvy octopi* know
There's just one way to go--
Find a coconut shell; crawl inside!


*don't even start.

Monday, December 14, 2009

What The...?

Inkily, Slinkily,
Tool-using octopus
Armors its body with
Coconut shells;

Film has been shot of this
Cephalopoddity--
Gives me the mother of
All "What the Hell?"'s



Excellent coverage by the BBC here.
Dr Mark Norman, head of science at Museum Victoria, Melbourne, and one of the authors of the paper, said: "It is amazing watching them excavate one of these shells. They probe their arms down to loosen the mud, then they rotate them out."
After turning the shells so the open side faces upwards, the octopuses blow jets of mud out of the bowl before extending their arms around the shell - or if they have two halves, stacking them first, one inside the other - before stiffening their legs and tip-toeing away.
Dr Norman said: "I think it is amazing that those arms of pure muscle get turned into rigid rods so that they can run along a bit like a high-speed spider.
"It comes down to amazing dexterity and co-ordination of eight arms and several hundred suckers."

Friday, December 04, 2009

For H. M.

My day goes by in bits and pieces,
The crossword puzzle, conversations,
Doctors asking, running tests;
They seem to know me; I don’t know how.
And who is that old man in the mirror?

My day goes by as days do, I suppose,
I watch TV, play bingo, read…
Today the crossword is very easy!
I don’t remember when I moved here—
And who is that old man in the mirror?

My day – I don’t recall yesterday—
A pleasant day, with pleasant friends,
I know my way through this house,
But I do not remember moving here,
And who is that old man in the mirror?

My day goes by in one-act plays
Old plots forgotten with the new,
I never know the actors’ names—
Each one is nice enough, it seems;
But who is that old man in the mirror?

Today, I’m feeling very tired;
I don’t know why—I’m much too young
To stiffly walk, to ache to move—
I must have worked hard yesterday.
I feel like that old man in the mirror.


As I write this, they are finishing up (just a couple more hours, perhaps!) the sectioning of the brain of H. M.. Henry Molaison, known to biology and psychology students everywhere as "H. M.", is perhaps the single most famous patient in history. Perhaps. He was studied for over half a century, from when he underwent psychosurgery in 1953 to alleviate epileptic convulsions, until his death last year. Henry had an extreme case of anterograde amnesia--the inability to form new episodic memories. He could learn new tasks, but would not know that he had learned them (his performance surprised himself!). He taught us, or allowed us to learn, more about how remembering works than we had ever suspected before. Abilities we thought as single were exposed as many parallel abilities, and not always the neat splits our introspective accounts may have predicted. (that may not be expressed well. It is late.)

His story has moved me more than I would have expected. I have written verse from the point of view of gods, but I cannot wrap my head around what Henry's life was like. I don't know that I would want to.

Anyway, if you follow the link above, you will see that they are looking for money. The goal is to make H.M.'s brain available to everybody--an atlas of the most studied brain in history. This is expensive. If you have any money left over after you have donated generously to my tip jar (fortunately, I am channeling H. M., and will not remember having written that), you should consider sponsoring some brain slides. And, just for practice, try imagining that you are living Henry's life. If you can get a handle on it, drop a note and let me know what it is like. I just can't do it.

Tuesday, October 27, 2009

Colossal Sea Monster!! O Noes!!



With powerful jaws, like steel girders in strength,
The biggest uncovered thus far,
At 2.4 meters of bone-crushing length
These jaws could bite clean through a car
With a gullet, we’re told, that could swallow a cow,
Next to this boy, T. rex is a kitten!
The biggest of fishes are Pliosaur chow—
When it bites you, you know you’ve been bitten!

For millions and millions of years, it’s been dead,
But it’s back for a visit, it seems—
Please excuse me—I’m going to go hide in my bed,
And hope we don’t meet in my dreams!


The Beeb reports on a gorgeous fossil skull, ten years in the collecting (as the cliff it was imbedded in slowly eroded), of an immense oceanic carnivore, a Pliosaur (with video... which I cannot, apparently, link directly, but which is very cool and worth visiting!).

The pleiosaur expert says a few things which get your attention--this creature could have bitten a small car in half, for instance, which I think probably explains the lack of automobiles in the fossil record. He says that Pliosaur could have swallowed T. rex in one gulp... which I suspect was hyperbole, but just in case, I'm planning on never swimming in the ocean again.


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Sunday, October 25, 2009

Finding Little Albert

“Little Albert” was a baby, nearly ninety years ago,
And a healthy, mild-mannered one, at that,
His demeanor was the reason he was chosen for the task
Of developing a phobia to rat

John B. Watson was the founder of Behaviorism, and
Was, by all accounts, a bastard through and through.
When presented with a baby, unemotional and strong,
John B. Watson knew exactly what to do.

In conditioning a phobia, one stimulus (a rat)
Had been demonstrated neutral to the kid.
Watson paired it with a scary noise, to see if he could make
Little Albert become phobic… which he did.

It was Watson’s final paper as an academic type,
Then a scandalous affair, and he resigned.
But the mystery that lingered was, what happened to the child?
He was difficult for anyone to find.

Did his phobia continue through a long and fearful life?
Was he traumatized, emotionally scarred?
Did he spend his childhood too afraid to even leave his house,
On the chance that there were rabbits in his yard?

A professor of psychology at Appalachian State
Set his students on the trail of “Albert B.”
So they sifted through the records and uncovered names and dates,
But the answer wasn’t waiting there to see.

They discovered information, though, that narrowed down the search;
Through the census and a search of family trees—
To a woman named Arvilla as the mother of a son
Little Douglas—“Albert B.” was just a tease.

While forensics can’t conclusively confirm that it was he,
There are many similarities involved
It’s statistically unlikely that coincidence is all,
So the authors say the mystery is solved!

Did he live in fear of furry things? Or maybe only rats?
Was his phobia an easy thing to fix?
All the rumors are just rumors, and assuredly are false—
For the boy died at the tender age of six.

Though his tale will live forever, it’s a shame he died so young;
Long before he could have recognized his fame;
On the other hand, consider… such a story, such a tale…
And for ninety years, with someone else’s name.


In this month's American Psychologist, an article on a mystery of history--the identity of "Little Albert". Mind Hacks has a summary, for those who prefer their summaries in prose. (Mind Hacks does not mention the blatant typo in paragraph 2 of the pdf; I can only hope that the pdf is a mutation of the original--the word "withouth" does not deserve coining.)

For those of you unfamiliar with Little Albert at all:


Cuttlecap tip to Kylie at Podblack!

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Monday, October 19, 2009

One Fish, Two Fish

One fish
Two fish
Cleaning-
Crew fish
Wonder who fish?
Yellow-blue fish!
Little fish, as bright as lights
Who love to munch on parasites!
Some are yellow; some are blue
Some very few, some other hue
Why are they colored just like this?
Go ask an ichthyologist!
Some are happy; some may gripe
The nice one has a vivid stripe!
From here to there, from there to here,
There’s fishes in our hydrosphere!
Here are some who like to learn
They love to learn for food they earn
Oh me! Oh my!
Oh my! Oh me!
What funny things live in the sea!
Some have two fins, and some have four
Some have eight legs, and some have more!
Where did they come from?
Ooze or slime?
They’ve co-evolved for a long, long time
We see them live
We see them die
Beneath the sea
Beneath the sky
Too many times
We say good-bye
Each one unique; each one distinct
Sometimes we’re why
They go extinct.


The New York Times has a really nice article about learning in fish, with both laboratory and reef studies examining different aspects of a single larger question, but with an irritating, very basic mistake that happens to be one of my pet peeves.

On the reef, the article reports on two different teams out of the University of Queensland, one looking at the effect of the cleaner wrasse (reefs without cleaner wrasses had about 5 times as many parasites as those with cleaners), and the other examining the role of color and pattern in the recognition of cleaner wrasses (color and stripe are both important, in case you wondered). In the lab, the ability of fish to recognize and differentially respond to visual stimuli was examined by yet more of those busy Queenslanders; damselfish demonstrated they could learn to recognize various patterns (in one experiment) and colors (in another) in both two and three dimensional targets.
Remarkably, the fish also learned when the food reward was delayed and delivered far from the stimulus. The damselfish exhibited what is called anticipatory behavior, in that they would tap the image and then swim quickly to the other end of their tank in anticipation of their food reward. This response is much like Pavlov’s dogs who learned to anticipate food at the sound of a bell.
No, it's not. Not like Pavlov's dogs, that is. The task the fish were presented with was clearly an operant chamber--a Skinner box (or Skinner tank, as it were)--the elegant device B. F. Skinner invented in order to examine operant behavior. Not respondent behavior, which is what Pavlov looked at.

In an otherwise excellent article (including a description of the procedure clear enough to easily see this error), does one sentence really make such a difference?

Well... yes. I don't know whether the mistake is the fault of the reporter or of the research team; sadly, either is possible. Behaviorism has been subject to steady misrepresentation for decades. It's as if the creationists got to control what the majority of Americans knew about evolution... Like that could ever happen.

And this one is so incredibly easy, too.

Basic.

Like, oh... Dr. Seuss.

*sigh*

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Plato, Linnaeus, Darwin, and Atheism

Barbara Bradley Hagerty's NPR piece, "A Bitter Rift Divides Atheists", put two thoughts in my head. The briefer first: Taking a look at religious sectarian violence the world over, isn't BBH impressed at how atheists handle alleged disagreements?

The second will take some time. You might want to pour yourself a drink first.

Plato’s view of reality proposed that there were ideal forms (platonic ideals) which we mere humans could not perceive—our abilities limited to seeing only imperfect copies of these ideals. We did, however, recognize kinds, as approximations to those ideals. We saw and recognized triangles because of their similarity to the ideal triangle, cats because of their similarity to the ideal cat, and so forth.

Linnaeus, in categorizing species, followed the platonic tradition. A species was defined by a representative of that species, a prototype, and by limited variation from that ideal. There was an ideal cat, but of course some are larger or smaller, striped or solid or tortoise-shell mottled or calico, with longer or shorter tails, faster or slower, more or fewer toes. This view of life made it very difficult to conceive of one species becoming another, or splitting into two.

Darwin rocked the world when, in his “Origin of Species”, he essentially rendered the word “species” obsolete, at least as it had previously been known. The average or ideal cat was no longer of any great interest; rather, the population of cats, individuals varying from one another, was what was important. There is, if I may abuse a metaphor, a spectrum of cats, a spectrum of pigeons, a spectrum of finches on each island of the Galapagos. The spectra vary for each species, but we could no more treat one individual as “the ideal” than we could suggest that any one wavelength represents sunlight, or fluorescent light, or incandescent.

Religions, arguably, may be described platonically. Using Linnaeus as our guide, we could arrive at Homo catholicus, “catholic man”; H. orthojudaicus, “orthodox jewish man”; H. australobapticus, southern baptist man, and so forth. We may do this because there does exist a set of beliefs that defines each religion (whether or not its followers adhere to those beliefs). There is no requirement for H. orthojudaicus to believe in the divinity of Christ, nor of H. australobapticus to follow the ex cathedra pronouncements of the pope. Each species religion has its own defining dogma, so a positive definition is quite appropriate. Many individuals fall short of that defining dogma, so variation (or “error”) is also expected.

Note, though, that these positive definitions are quite limited. To know that someone is H. catholicus tells us a few things to expect about this person. Knowing only that someone is not a member of this species tells us very nearly nothing at all. The non-catholic may be Christian, Muslim, Jew, Hindu, Pantheist, Wiccan, Polytheist, Deist, any of thousands of other belief systems… or may be atheist. The non-Sunni may be Muslim, Christian, Jew, Hindu… or atheist. The non Orthodox Jew may be Jew, Christian, Muslim… or atheist. A negative definition (non-X) tells us almost nothing at all about someone.

Atheism is, and must be, negatively defined. It is the “none of the above” alternative to the list of thousands of religions and sects. There is no creed to which all atheists must cling, even in theory. There is no defining characteristic shared by all atheists—even “they don’t believe in god” is incomplete, as the majority of religious believers also do not believe in the other religions’ god(s). (Recall that the first people to be called “atheist” were early Christians, because they did not believe in the Greek pantheon!)

As a privative category (defined by what it is not), there is no ideal atheism from which to have schisms. There is, instead, a spectrum of beliefs. To the extent that we take this spectrum and attempt to split it into black and white (or any segments, even ROY G. BIV) , we are artificially imposing boundaries where there are none naturally. The “hard atheism” and “soft atheism” dichotomy is not about atheism, but rather about the presence or absence of a completely different and orthogonal set of beliefs—after all, the people most likely to positively affirm the statement “there is no Zeus” are people who also positively affirm that there is a Yahweh. “Hard” atheism can only be defined one deity at a time, which makes it something other than “none of the above”. It is an attempt to use the vocabulary of religion to describe the absence of same.

A Darwinian, population-centered approach, is more accurate. Atheists are bigger or smaller, smarter or stupider, louder or quieter… pretty much like the rest of H. sapiens is. And, in truth, H. catholicus varies pretty widely from its alleged ideal form, so much so that the term “cafeteria catholic” is commonplace. The entire Order Religiosa will, in fact, contain tremendous variability, both within and between species. We should not expect all catholics to behave alike, nor all jews, nor all muslims, nor all protestants (let alone all denominations within these broader groups).

The truth is, no matter where we look, we see spectra. We see variability. It is not unexpected; it is not diagnostic; it is not evidence of schism. It is nature.

Writingly, Bitingly,
B. Bradley Hagerty
Writes about Atheists,
Finding a schism;

Godlessness, organized
Quasi-religiously:
All of humanity
Seen through her prism.

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Monday, October 12, 2009

Shakespeare's "Linguistic Fingerprint" Solves Mystery

We crave to know: Did Shakespeare write this play?
The academic types love to dispute
This work or that; the tool they ply today,
A software program, used in the pursuit
Of plagiarism in college papers. Now
It serves to tally up the phrases seen
In this and Shakespeare’s plays, and thus allow
Comparisons made, among them and between.
Two Hundred matches found, of phrases three
Words or more in length. (In truth, they did
Find as many for another—thus, we see
That Shakespeare shared the task with Thomas Kyd)
“Linguistic fingerprints”, it seems, have shown
He wrote the play, but did not work alone.


The software program "Pl@giarizm" was intended to catch cheating students. It may have caught an entirely different fish. Scholars have disagreed as to the authorship of The Reign of King Edward III, although at least some Shakespeare anthologies include it. Much of it seemed... just not Shakespeare.

We may have an answer:
Sir Brian Vickers, an authority on Shakespeare at the Institute of English Studies at the University of London, believes that a comparison of phrases used in The Reign of King Edward III with Shakespeare’s early works proves conclusively that the Bard wrote the play in collaboration with Thomas Kyd, one of the most popular playwrights of his day.
The program found about 200 matches between Shakespeare and the play, and about 200 between Kyd and the play:
The Shakespeare matches came from four scenes, about 40 per cent of the play. The remaining scenes had about 200 matches with works by Kyd, best known for The Spanish Tragedy, a play known to have influenced Shakespeare, indicating that he wrote the other 60 per cent of the play.
Nice work.

But according to the software, some of my students must have collaborated with some pretty impressive researchers! I should show them a bit more respect!
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Saturday, October 10, 2009

NPR's Brain On God


Image (and story), NPR

Part 1: The God Chemical

Serotonin, in the human, is found mostly in the gut;
It helps peristaltic motion not to quit.
Serotonin—“the God chemical?”—If true, I’ll tell you what:
In both processes, the end result is shit.

Neurotransmitters will regulate the way we think and feel,
Or hallucinate or daydream, just the same.
We may feel a holy presence, but that doesn’t make it real;
It’s just serotonin, playing at its game.

Part 2: The God Spot

Teasingly, seizingly,
Neural activity,
Mostly confined to the
Temporal lobe,

Looks diagnostic to
Epileptologists,
Pointing to Abraham,
Moses, or Job.

Part 3: Spiritual Virtuosos

The brains of those who meditate (or speak in tongues, or pray)
Exhibit odd activity, or so researchers say.
It shouldn’t be surprising that their brains are acting odd—
That’s quite a lot of work for them to do… creating God.

Part 4: The Biology Of Belief

Can I influence things with my mind?
In experiments, run double-blind,
The clear answer is “no”;
But the money will go
To the studies more poorly designed.

The data, so far, have been clear;
Your mind won’t, when you’re gone, persevere.
Once you draw your last breath,
There’s no life after death,
Though that isn’t what some want to hear.

And the numbers are clear about prayer:
No effect (maybe God isn’t there?).
And I don’t find it funny
To hear that my money
Is spent on this sordid affair.

Part 5: Near-Death Experiences

The cases all vary, as well you might guess—
There cannot be “standard conditions”
The end of a life is a terrible mess—
Too bad for the researchers’ missions.

Reports of a “near death experience” may
Involve seeing a light, or may not.
Did your life flash before you, as some people say?
(I guess sometimes, they simply forgot.)

Was your heart being monitored? How ‘bout your brain?
You may guess that such cases are rare.
The claims may be many, but sometimes we strain
To find something reliable there.

But always the stories will grow in the telling
To tales we can hardly conceive!
(Especially so, when there’s books to be selling)
Some people just want to believe.


A couple of comments... I really really really found this article annoying. In what appears to be "showing both sides to the story", weasel-like language is used again and again. "Scientists are looking at..." um... how many scientists? What percentage of the people looking at this topic are looking at it from this perspective? "[A] small but increasing number of scientists..." increasing from what to what? Again, what percentage of relevant researchers fit your description?

In this case, I have taught courses in relevant subject areas, and I know that they are presenting a very highly distorted view of the picture. But you don't have to believe me; there are libraries and databases you could check. Libraries and databases that NPR must have studiously ignored.

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Wednesday, October 07, 2009

The Worth Of Science

Ok, I never do this--it is tough enough to come up with one post a day (I usually can't, so you get a few a week, but rarely as many as seven!), let alone more than that. But the NPR comment thread includes people asking what tangible value we get from the amazing discovery of the new (ok, newly found) ring around Saturn. And other commenters are taking the bait, giving answers framed in terms of dollars or other pragmatic criteria.

It is in times like this that I am thankful to both History and Winston Churchill. History, because scientific discoveries so often prove practically useful--sometimes long after they are found (the recent Nobel prizes show that practical applications certainly can come from pure research), and Churchill for one quote. Asked if he would suspend Arts subsidies in order to help the war effort, Churchill replied "What the hell do you think we're fighting for?"

If Churchill can use that reasoning, so can I.

What use is this discovery?
How many will it feed?
How many will it rescue from their poverty and need?
How many of my dollars went
To see this plan succeed,
While all around the globe, the people starve, the people bleed?

This money could be better used—
We could have gotten more!
Let’s fix the problems here at home, before we go explore!
The piles of money spent on this
We cannot just ignore—
A tenth of a percent* of what we spent on Iraq’s war!

Let’s question all the cost, of course,
And effort that we’re spending,
Against the gains in science, and the knowledge we’re extending.
It may not help to win a war,
If that’s what we’re pretending,
But stuff like this can make our culture one that’s worth defending**.


*ok, slightly less. Poetic license. Total cost of Spitzer telescope: 720 million dollars, according to Caltech. Total cost of Iraq war so far: 860 Billion as of February of this year, according to the NYTimes.

**not my idea—Winston Churchill’s.

Oh, I forgot! This and the last post were also posted as comments on an NPR story here.

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New Bling For Saturn! (Galileo's Revenge)


When Galileo told the Pope
“Here, look into my telescope—
You’ll see much beauty there, I hope.”
His Holiness, the Pope, said “Nope.”

“Now kiss my ring, instead, and swear
That nothing of the sort is there—
I know you think it is not fair,
But I’m the Pope, as you’re aware.”

The Pope’s command was quite absurd,
But Galileo gave his word,
(Though some report him undeterred:
“E pur si muove” overheard.)

In hindsight now, with great delight,
We know, despite his Papal might,
That evidence would come to light
To prove the heretic was right.

With Urban’s ring already kissed,
The chance to get it right was missed,
Just one more error on the list—
But now, we find another twist!

What wonders will the cosmos bring?
Now Saturn sports another ring!
Much bigger than the Pope’s, this thing
Is interplanetary bling!

Four centuries have come to pass
Since Galileo ground his glass;
Far too much time for him, alas,
To tell the Pope to kiss his ass.

But now, the kids will learn in school:
That Saturn sports another jewel;
That telescopes are really cool;
One may be Pope, but still a fool.


I hope you will all, by now, have heard the very cool news: a new ring has been discovered around Saturn--a very different ring than any of the others; thicker, wider, in a different orientation than the other rings. The infrared imager on the Spitzer Space Telescope detected the faint image; the density of this ring equates to about 20 grains of material per cubic kilometer. You would not see it if you were standing in the middle of it; as Gertrude Stein said about Oakland, "when you get there, there isn't any there there." Once again, science and technology stretch the limits of what humankind can perceive... when we are willing to look through the eyepiece.

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Friday, October 02, 2009

Ardi, You Gorgeous Creature!

If my blog is the first you have heard of Ardi, you need to get out more. Ardipithecus ramidus is her species, "Ardi" is her nickname, and I love her. She is, I will admit, a bit old for me, and a bit dead. Four point four million years dead. So it is a bit of a Platonic love, even if she predated Plato by more years than the gent could have imagined were possible. She made the front page of the New York Times today (that's the link above), with a photo spread online and everything, and I knew exactly what I was getting into when I clicked to look at the comments. I swear, the experimental studies on cognitive dissonance prove that creationists know they are liars: Festinger knew that we tend to look for confirming evidence--things that support what we already believe--and tend to avoid discomfirming evidence... but creationists are all over this story like stupid on Ken Ham, making excuses for what seems like the millionth nail in their pathetic coffin.

For those of you who love the archaeology/anthropology bit, have fun with all the wonderful articles and commentary. For those of you who also enjoy watching a nice train wreck... don't forget to read the comment threads.

It’s predictable as sunrise; it’s predicable as tide;
As the evidence is published, it is just as soon denied.
“It’s the fossil of a monkey!” “Hey, my brother’s also short!”
“There is nothing in the Bible that’s denied by this report!”
“Evolutionist conspiracy!” I cannot list them all,
As if Ardi acts as proof there was Creation, and then Fall.
There will never be a fossil found to calm the silly storm,
That’s accepted as example that’s transitional in form.
The specimens were numerous, but never quite enough—
Unless you’ve found “the missing link”, they’re gonna call your bluff.

Our family tree has changed again, as many times before;
Each fossil was disputed in its turn, so what’s one more?
How comforting—there’s one thing that’s consistent from the start:
Creationists and ignorance will never, ever part.



As an aside... The NYTimes article, in part, states
The Ardipithecus specimen, an adult female, probably stood four feet tall and weighed about 120 pounds, almost a foot taller and twice the weight of Lucy. Its brain was no larger than a modern chimp’s. It retained an agility for tree-climbing but already walked upright on two legs, a transforming innovation in hominids, though not as efficiently as Lucy’s kin.
In one sentence, they identify Ardi as female; in the next and following, her pronoun is "it". Wha? My pets have the privilege of gendered pronouns, but not my great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-.... great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-great-grandmother? (bonus points for whoever can fill in the ellipses within an order of magnitude) This is just not fair!


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Thursday, September 10, 2009

Grand-Dad!


I have a small bottle of sepia ink
Which I use for particular writing.
The feel of a quill-pen is special, I think,
And I find the whole process exciting.

I read in the news, of an interesting find,
Of a well-preserved cephalo-fossil
(The paleontologists gladly remind,
What we learn may be truly colossal!

See, soft-tissue fossils are rare, as a rule,
So an ink-sac was quite unexpected—
This cephalofind was the coolest of cool,
As a rock that can still be dissected!)

The scientists ground up the fossilized sac
To make ink for its own illustration—
Some see this as fitting, while others attack
It as cruel (in unique presentation!*)

Myself, as his great-great-great-great-great-great-great
Great-great-grandson, I want his return.
His repatriation to Cuttle-Estate,
To his burial inkwell—er, urn.



*Anyone who does not follow this link and read the whole thing is a complete gooberhead. Just sayin'.

Cuttlecap tip to Karen--Thanks!

Saturday, September 05, 2009

A Verse On The Echidna's Four-Headed Penis

Ok, in truth, this was inspired by this post on Pharyngula, but that was not the whole point of PZ's post, so I was going to use some other source... but frankly, if you google "echidna penis" you get more than, perhaps, you were looking for. Anyway, go ahead and do an image search for an echidna's penis, and you will see that it has four heads. A little more looking into the available information about female echidnas, and you may understand why.

I count myself very grateful indeed that I am not an Echidna.

Two heads are better than one, so they say,
So four heads are better by far;
It took evolution to build this array,
And to humans, it still seems bizarre.

It never would work for a human male, though,
(Is it blessing, or is it a pity?)
See, men tend to think with their dicks, and we know
That nothing gets done by committee.

Friday, August 28, 2009

Selection Favors The Prepared Cephalopod

So I had read the news release, and thought "Ah! Finally, a chance to beat Myers to a post about cephalopods!" Silly me. You don't tug on Superman's cape; you don't spit into the wind; you don't pull the mask off the ol' Lone Ranger, and you never try to beat PZ Myers to a story involving cephalopods. But I do have a cooler illustration (which I will put at the bottom, just for suspense; the first illustration is the same one PZ used), again from Mike McRae. I was not planning to post it yet, but this story is just too perfect.


The first illustration, from Science magazine; on the left is a fossil ammonoid; on the right, the vampire squid Vampyroteuthis infernalis. The vampire squid lives in water with very little dissolved oxygen; the ability to live in such conditions may be the reason for an explosion of cephalopods following the Permian Extinction. For more information, see PZ's post, or the New York Times article, or even the Science article, if you have access.

The Permian Extinction wiped out ninety-plus percent
Of the creatures that had, by that time, evolved.
A rapid rise in atmospheric CO2 had meant
That the water had less oxygen dissolved.
(I know, I know, the animals on land were also hit,
But the news today is focused on the sea;
And you may call me biased—which I’ll readily admit—
So this story is more interesting to me!)
The ammonoids—the ancestors to octopus and squid,
And to cuttlefish (their greatest claim to fame)—
Were badly hurt, like all the rest; their population slid,
Ah, but from those few survivors, see what came!
The ammonoids exploded (metaphorically, of course),
Filling niches left by species that had died;
The few remaining species were selection’s vital source
For diversity to fill the planet wide.
Their secret to survival? One scenario is this:
They’d adapted to the cold, anoxic deep,
And the new conditions everywhere were like their old abyss,
So selection said: “I think, this one I’ll keep.”
When catastrophe sweeps multitudes from off the planet’s face,
Evolution makes the best of what’s still there;
This story shows that, sometimes, if you want to win the race,
Be a metabolic tortoise, not a hare!


Now, the beautiful illustration--a cephalopod version of Darwin's "Tree of Life"!

Thursday, August 27, 2009

Science Is A Cephalopod



Hey, my first chance to show off some of the new artwork (for the upcoming revised, updated and improved book)! Mike McRae, the artist behind my banner art (thanks, Podblack, for suggesting him!), has drawn a few illustrations for the chapters. He asked me what I had in mind for each, listened carefully to my rambling suggestions, then wisely ignored a great many of them in order to produce something much much better.

And sometimes, his choices were very very different from mine. For instance, rather than sticking with a cuttlefish for each illustration, he has used octopus, squid, and even nautilus! At first, the notion of the nautilus grabbing the prize gig of representing science rather galled me... but then, it suddenly could not be more perfect. Science, after all, grows by testing hypotheses, and discarding ideas that cannot be supported. If science has grown to the point where an old idea no longer fits, we abandon it, and sort of wall it off (there is no reason to reconsider geocentrism as being worth another look at this point, after all). And with every rejection, science grows.

I guess what I am trying to say is...


Science is a nautilus; it builds upon its past,
By discarding what it clearly has outgrown;
Empirically assessing views that will or will not last,
And adding to the sum of what is known

Our ancient view of nature was ridiculously small,
From the universe itself, to our place in it—
But our knowledge grew, until that view could never hold it all,
And it’s growing more with every passing minute

A new and better theory soon replaced the old and weak;
This may also be abandoned as we grow;
If a theory is found wanting, then a better one we seek,
Which is how we keep increasing what we know

The nautilus will build a wall, to permanently close
Any cell for which it has no further use;
When you find a static charge can heat the air up till it glows,
You’ve got lightning with no need to call in Zeus

Should a scientist today concede the Earth is really flat?
That phlogiston is the reason fires burn?
That demons are the cause of plagues (and never mind that rat)?
That is not the way to grow from what we learn!

An open mind is willing, if it must, to close a door,
If the evidence is clear that’s what to do;
We must never mourn the tiny room we occupied before—
There is so much more amazement in the new!